indexFasta {GeneR} | R Documentation |
These functions create an index file for retrieving quickly a sequence into a fasta, genbank or embl sequence bank file.
indexFasta(file) indexEmbl(file,index="ix") indexGbk(file)
file |
String/scalar, File path and name of the sequences file |
index |
String/scalar, Suffix for the index file |
1 |
Indexfile has been created |
-1 |
Error |
These functions create an index file even if it already exists.
Access number larger than 40 characters are skipped (a warning is
returned). This can be increasing with variable MAX\_LEN\_ACCNO
in
file GeneR\_globals.h (and rebuild GeneR library).
Antoine Lucas