readEmblDescript {GeneR}R Documentation

Read features from an Embl bank file

Description

Read features from an Embl bank file

Usage

readEmblDescript(file, name = NA, code = "DE")

Arguments

file

String/scalar, File name of the bank (example: "foo.embl")

name

String/scalar, Sequence name (default : first sequence)

code

String/scalar, feature code to look for (i.e. "CC", "DE", "CC", etc...)

Value

A vector of character string.

Author(s)

Antoine Lucas

Examples


## Not run: 
download.file("http://bioinfo.hku.hk/sars/AY291451.seq",
destfile="AY291451.seq")

readEmblDescript(file = "AY291451.seq",name ="AY291451",code ="DE")

##_returns: "SARS coronavirus TW1, complete genome."


readEmblDescript(file = "AY291451.seq",name ="AY291451",code ="OC")

##_returns: "Viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirus; SARS coronavirus."

readEmblDescript(file = "AY291451.seq",name ="AY291451",code ="RA")
##[1] "Yeh S.-H., Kao C.-L., Tsai C.-Y., Liu C.-J., Chen D.-S., Chen P.-J.;"
##[2] "Yeh S.-H., Kao C.-L., Tsai C.-Y., Liu C.-J., Chen D.-S., Chen P.-J.;"


## End(Not run)

[Package GeneR version 2.24.0 Index]