readEmblDescript {GeneR} | R Documentation |
Read features from an Embl bank file
readEmblDescript(file, name = NA, code = "DE")
file |
String/scalar, File name of the bank (example: "foo.embl") |
name |
String/scalar, Sequence name (default : first sequence) |
code |
String/scalar, feature code to look for (i.e. "CC", "DE", "CC", etc...) |
A vector of character string.
Antoine Lucas
## Not run: download.file("http://bioinfo.hku.hk/sars/AY291451.seq", destfile="AY291451.seq") readEmblDescript(file = "AY291451.seq",name ="AY291451",code ="DE") ##_returns: "SARS coronavirus TW1, complete genome." readEmblDescript(file = "AY291451.seq",name ="AY291451",code ="OC") ##_returns: "Viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirus; SARS coronavirus." readEmblDescript(file = "AY291451.seq",name ="AY291451",code ="RA") ##[1] "Yeh S.-H., Kao C.-L., Tsai C.-Y., Liu C.-J., Chen D.-S., Chen P.-J.;" ##[2] "Yeh S.-H., Kao C.-L., Tsai C.-Y., Liu C.-J., Chen D.-S., Chen P.-J.;" ## End(Not run)