lowerSeq {GeneR}R Documentation

Convert upper/lower-case characters in sequence fragments

Description

Converts sequence fragments in lower or upper case letters

Usage

lowerSeq(seqno=0, from=1, to=0)
upperSeq(seqno=0, from=1, to=0)

Arguments

seqno

Integer/scalar, Sequence number (buffer number)

from, to

Integer/scalar, Absolute addresses of the begin and the end of the fragment, (1 means the first nucleotide and 0 conventionally the last one; from must not be larger than to and both vectors must be the same size)

Author(s)

Antoine Lucas

See Also

posMaskedSeq

Examples


s<-"aaaacgtagctagctagctacccccctagctacgtagattttt"
placeString(s,upper=FALSE)
x<-c(1,21,39)
y<-c(4,28,0)

upperSeq(from=x,to=y)

getSeq()

[Package GeneR version 2.24.0 Index]