#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/FORMAT/MzMLFile.h>
#include <OpenMS/CONCEPT/Constants.h>
#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/CHEMISTRY/ModificationsDB.h>
#include <OpenMS/DATASTRUCTURES/Param.h>
#include <OpenMS/FORMAT/FeatureXMLFile.h>
#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/CHEMISTRY/Element.h>
#include <OpenMS/CHEMISTRY/ElementDB.h>
#include <OpenMS/MATH/STATISTICS/StatisticFunctions.h>
#include <OpenMS/MATH/MISC/BilinearInterpolation.h>
#include <OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h>
#include <OpenMS/MATH/MISC/NonNegativeLeastSquaresSolver.h>
#include <OpenMS/FORMAT/SVOutStream.h>
#include <OpenMS/FORMAT/TextFile.h>
#include <OpenMS/FILTERING/TRANSFORMERS/Normalizer.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussModel.h>
#include <OpenMS/COMPARISON/SPECTRA/SpectrumAlignment.h>
#include <OpenMS/FILTERING/TRANSFORMERS/ThresholdMower.h>
#include <OpenMS/MATH/MISC/CubicSpline2d.h>
#include <OpenMS/CHEMISTRY/MASSDECOMPOSITION/MassDecomposition.h>
#include <OpenMS/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.h>
#include <boost/math/distributions/normal.hpp>
#include <QtCore/QStringList>
#include <QtCore/QFile>
#include <QtCore/QDir>
#include <QtCore/QFileInfo>
#include <QtCore/QProcess>
#include <algorithm>
#include <iostream>
#include <iomanip>
#include <fstream>
#include <map>
#include <math.h>
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