This application is used to digest a protein database to get all peptides given a cleavage enzyme. It will also produce peptide statistics given the mass accuracy of the instrument. You can extract peptides with specific motifs,e.g. onyl cysteine containing peptides for ICAT experiments. At the moment only trypsin is supported.
The command line parameters of this tool are:
INI file documentation of this tool:
OpenMS / TOPP release 2.0.0 | Documentation generated on Mon May 23 2016 19:47:16 using doxygen 1.8.11 |