libSBML C++ API
5.11.0
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CAlgebraicRule | An SBML algebraic rule representing 0 = f(W) |
CAssignmentRule | An SBML assignment rule representing x = f(Y) |
CAssociation | fbc Proposed representation of gene associations |
CASTNode | Abstract Syntax Trees for mathematical expressions |
CBoundingBox | layout A bounding box for an item in a diagram |
CCobraToFbcConverter | fbc COBRA to SBML Level 3 'fbc' converter |
CCompartment | An SBML compartment, where species are located |
CCompartmentGlyph | layout A glyph for an SBML compartment |
CCompartmentType | A compartment type in SBML Level 2 |
CCompExtension | comp Base extension class for the package |
CCompFlatteningConverter | comp "Flattens" a model, removing composition |
CCompModelPlugin | comp Extension of Model |
CCompPkgNamespaces | comp SBMLNamespaces extension for the package |
CCompSBasePlugin | comp Extension of SBase |
CCompSBMLDocumentPlugin | comp Extension of SBMLDocument |
CCompValidator | comp Entry point for package validation |
CConstraint | An SBML constraint, for stating validity assumptions |
CConversionOption | A single configuration setting for an SBML converter |
CConversionProperties | Set of configuration option values for a converter |
CCubicBezier | layout A Cubic Bézier smooth curve |
CCurve | layout A curve connecting elements in a diagram |
CCVTerm | A MIRIAM-compliant controlled vocabulary term |
CDate | A MIRIAM-compliant date representation |
CDefaultTerm | qual The default result of a Transition |
CDelay | A delay on the time of execution of an SBML event |
CDeletion | comp Deletion of an object from a submodel |
CDimensions | layout Spatial dimensions of a 2D or 3D shape |
CElementFilter | Base class for filter functions |
CEvent | A discontinuous SBML event |
CEventAssignment | An assignment to a variable by an SBML event |
CExternalModelDefinition | comp A reference to an externally-defined model |
CFbcExtension | fbc Base extension class for the package |
CFbcModelPlugin | fbc Extension of Model |
CFbcPkgNamespaces | fbc SBMLNamespaces extension for the package |
CFbcSBMLDocumentPlugin | fbc Extension of SBMLDocument |
CFbcSpeciesPlugin | fbc Extension of Species |
CFbcToCobraConverter | fbc SBML Level 3 'fbc' to COBRA converter |
CFbcValidator | fbc Entry point for package validation |
CFluxBound | fbc Max or min value for a reaction flux |
CFluxObjective | fbc An objective function for a flux |
CFormulaTokenizer_t | Tracks the state of tokenizing a formula string |
CFunctionDefinition | A user-defined function in an SBML model |
CFunctionTerm | qual A function term |
CGeneAssociation | fbc Proposed annotation for gene associations |
CGeneralGlyph | layout A glyph for miscellaneous items |
CGraphicalObject | layout Base class of objects that store layouts |
CInitialAssignment | An SBML initial assignment, evaluated once only |
CInput | qual The input to a QualitativeSpecies |
CKineticLaw | The rate expression for an SBML reaction |
CL3ParserSettings | Controls the behavior of the Level 3 formula parser |
CLayout | layout The layout of a diagram of an SBML model |
CLayoutExtension | layout Base extension class for the package |
CLayoutModelPlugin | layout Extension of Model |
CLayoutPkgNamespaces | layout SBMLNamespaces extension for the package |
CLayoutSBMLDocumentPlugin | layout Extension of SBMLDocument |
CLayoutSpeciesReferencePlugin | layout Extension of SpeciesReference |
CLayoutValidator | layout Entry point for package validation |
CLineSegment | layout Representation of a line |
CList | Simple, plain, generic lists |
CListOf | Parent class for libSBML's "ListOfXYZ" classes |
CListOfCompartmentGlyphs | layout A list of CompartmentGlyph objects |
CListOfCompartments | A list of Compartment objects |
CListOfCompartmentTypes | A list of CompartmentType objects |
CListOfConstraints | A list of Constraint objects |
CListOfDeletions | comp A list of Deletion objects |
CListOfEventAssignments | A list of EventAssignment objects |
CListOfEvents | A list of Event objects |
CListOfExternalModelDefinitions | comp A list of ExternalModelDefinition objects |
CListOfFluxBounds | fbc A list of FluxBound objects |
CListOfFluxObjectives | fbc A list of FluxObjectives |
CListOfFunctionDefinitions | A list of FunctionDefinition objects |
CListOfFunctionTerms | qual A list of FunctionTerm objects |
CListOfGeneAssociations | fbc A list of GeneAssociation objects |
CListOfGraphicalObjects | layout A list of GraphicalObject objects |
CListOfInitialAssignments | A list of InitialAssignment objects |
CListOfInputs | qual A list of Input objects |
CListOfLayouts | layout A list of Layout objects |
CListOfLineSegments | layout A list of LineSegment objects |
CListOfLocalParameters | A list of LocalParameter objects |
CListOfModelDefinitions | comp A list of ModelDefinition objects |
CListOfObjectives | fbc A list of Objective objects |
CListOfOutputs | qual A list of Output objects |
CListOfParameters | A list of Parameter objects |
CListOfPorts | comp A list of Port objects |
CListOfQualitativeSpecies | qual A list of QualitativeSpecies objects |
CListOfReactionGlyphs | layout A list of ReactionGlyph objects |
CListOfReactions | A list of Reaction objects |
CListOfReferenceGlyphs | layout A list of ReferenceGlyph objects |
CListOfReplacedElements | comp A list of ReplacedElement objects |
CListOfRules | A list of Rule objects |
CListOfSpecies | A list of Species objects |
CListOfSpeciesGlyphs | layout A list of SpeciesGlyph objects |
CListOfSpeciesReferenceGlyphs | layout A list of SpeciesReferenceGlyph objects |
CListOfSpeciesReferences | A list of SpeciesReference objects |
CListOfSpeciesTypes | A list of SpeciesType objects |
CListOfSubmodels | comp A list of Submodel objects |
CListOfTextGlyphs | layout A list of TextGlyph objects |
CListOfTransitions | qual A list of Transition objects |
CListOfUnitDefinitions | A list of UnitDefinition objects |
CListOfUnits | A list of Unit objects |
CLocalParameter | A parameter inside an SBML reaction definition |
CModel | An SBML model |
CModelCreator | MIRIAM-compliant data about a model's creator |
CModelDefinition | comp A model used in model composition |
CModelHistory | MIRIAM-compliant data about a model's history |
CModifierSpeciesReference | A reference to an SBML modifier species |
CObjective | fbc An objective function |
COutput | qual The output from a QualitativeSpecies |
CParameter | An SBML parameter: a named symbol with a value |
CPoint | layout Representation of a point |
CPort | comp An interface to be used in composition |
CPriority | The priority of execution of an SBML event |
CQualExtension | qual Base extension class for the package |
CQualitativeSpecies | qual Extension of Species |
CQualModelPlugin | qual Extension of Model |
CQualPkgNamespaces | qual SBMLNamespaces extension for the package |
CQualSBMLDocumentPlugin | qual Extension of SBMLDocument |
CQualValidator | qual Entry point for package validation |
CRateRule | An SBML rate rule representing dx/dt = f(Y) |
CRDFAnnotationParser | MIRIAM-compliant RDF annotation reader/writer |
CReaction | An SBML reaction between species in an SBML model |
CReactionGlyph | layout A glyph for an SBML reaction |
CReferenceGlyph | layout Connection between an object and a glyph |
CReplacedBy | comp Indicates an object replaced by another |
CReplacedElement | comp Indicates an object replaces another |
CReplacing | comp Convenience class |
CRule | Parent class for SBML rules in libSBML |
CSBase | SBML's SBase class, base class of most SBML objects |
CSBaseExtensionPoint | Base class for extending SBML components |
CSBasePlugin | Base class for extending SBML objects in packages |
CSBasePluginCreator | Template for SBasePlugin factory objects |
CSBasePluginCreatorBase | Base class of SBasePluginCreator |
CSBaseRef | comp Base class for references to objects |
CSBMLConstructorException | Exceptions thrown by some libSBML constructors |
CSBMLConverter | Base class for SBML converters |
CSBMLConverterRegister | Template for SBML converter registry registrations |
CSBMLConverterRegistry | Registry of all libSBML SBML converters |
CSBMLDocument | Overall SBML container object |
CSBMLDocumentPlugin | Base class for extending SBMLDocument in packages |
CSBMLDocumentPluginNotRequired | Base class for non-required Level 3 packages plug-ins |
CSBMLError | An error, warning or other diagnostic |
CSBMLErrorLog | Log of diagnostics reported during processing |
CSBMLExtension | Base class for SBML Level 3 package plug-ins |
CSBMLExtensionException | Exception used by package extensions |
CSBMLExtensionNamespaces | Set of SBML Level + Version + namespace triples |
CSBMLExtensionRegister | Template class for extension package registration |
CSBMLExtensionRegistry | Registry where package extensions are registered |
CSBMLFileResolver | comp Resolves documents stored on a file system |
CSBMLFunctionDefinitionConverter | Converter to expand user-defined functions in-line |
CSBMLIdConverter | Converter for replacing object identifiers |
CSBMLInferUnitsConverter | Converter for inferring and setting parameter units |
CSBMLInitialAssignmentConverter | Converter that removes SBML initial assignments |
CSBMLInternalValidator | Basic SBML consistency checks and other validations |
CSBMLLevelVersionConverter | Whole-document SBML Level/Version converter |
CSBMLLocalParameterConverter | Converter to turn local parameters into global ones |
CSBMLNamespaces | Set of SBML Level + Version + namespace triples |
CSBMLReactionConverter | Converter to replace reactions with SBML rate rules |
CSBMLReader | File and text-string SBML reader |
CSBMLResolver | comp Base class for SBML resolvers |
CSBMLResolverRegistry | comp Registry of all SBML resolvers |
CSBMLRuleConverter | Converter that sorts SBML rules and assignments |
CSBMLStripPackageConverter | Converter that removes SBML Level 3 packages |
CSBMLUnitsConverter | Converts a model's existing units to SI units |
CSBMLUri | comp Utility class for handling URIs |
CSBMLValidator | Base class for SBML validators |
CSBMLVisitor | Support class for operations on SBML objects |
CSBMLWriter | File and text-string SBML writer |
CSBO | Facilities for using the Systems Biology Ontology |
CSimpleSpeciesReference | Abstract class for references to species in reactions |
CSpecies | An SBML species – a pool of entities |
CSpeciesGlyph | layout A glyph for an SBML species |
CSpeciesReference | A reference to an SBML species in a reaction |
CSpeciesReferenceGlyph | layout A glyph for an SBML species reference |
CSpeciesType | A species type in SBML Level 2 |
CStoichiometryMath | Stochiometry expressions in SBML Level 2 reactions |
CSubmodel | comp A model instance inside another model |
CSyntaxChecker | Methods for checking the validity of SBML identifiers |
CTextGlyph | layout A glyph for a text label |
CToken_t | A token from FormulaTokenizer_nextToken() |
CTransition | qual A transition of a QualitativeSpecies |
CTrigger | The trigger expression for an SBML event |
CUnit | A single unit referenced in an SBML unit definition |
CUnitDefinition | A definition of a unit used in an SBML model |
CValidator | Entry point for SBML validation rules in libSBML |
CVConstraint | Helper class for SBML validators |
CXMLAttributes | A list of attributes on an XML element |
CXMLConstructorException | Exceptions thrown by some libSBML constructors |
CXMLError | XML-level errors, warnings and other diagnostics |
CXMLErrorLog | Log of diagnostics reported during XML processing |
CXMLInputStream | An interface to an XML input stream |
CXMLLogOverride | Facility for temporarily overriding error severities |
CXMLNamespaces | An XML Namespace |
CXMLNode | A node in libSBML's XML document tree |
CXMLOutputStream | Interface to an XML output stream |
CXMLToken | A token in an XML stream |
CXMLTriple | A qualified XML name |