libSBML Python API  5.11.0
Class List
Here are the classes, structs, unions and interfaces with brief descriptions:
[detail level 12]
 Nlibsbml
 CAlgebraicRule An SBML algebraic rule representing 0 = f(W)
 CAssignmentRule An SBML assignment rule representing x = f(Y)
 CAssociationfbc Proposed representation of gene associations
 CASTNode Abstract Syntax Trees for mathematical expressions
 CASTNodeListClass for managing lists of ASTNode objects
 CAutoPropertyAuto-detect Python class getX/setX methods
 CBoundingBoxlayout A bounding box for an item in a diagram
 CCobraToFbcConverterfbc COBRA to SBML Level 3 'fbc' converter
 CColorDefinitionLibSBML implementation for the ColorDefinition construct from the SBML render extension
 CCompartment An SBML compartment, where species are located
 CCompartmentGlyphlayout A glyph for an SBML compartment
 CCompartmentType A compartment type in SBML Level 2
 CCompExtensioncomp Base extension class for the package
 CCompFlatteningConvertercomp 'Flattens' a model, removing composition
 CCompModelPlugincomp Extension of Model
 CCompPkgNamespacescomp SBMLNamespaces extension for the package
 CCompSBasePlugincomp Extension of SBase
 CCompSBMLDocumentPlugincomp Extension of SBMLDocument
 CConstraint An SBML constraint, for stating validity assumptions
 CConversionOption A single configuration setting for an SBML converter
 CConversionProperties Set of configuration option values for a converter
 CCubicBezierlayout A Cubic Bézier smooth curve
 CCurvelayout A curve connecting elements in a diagram
 CCVTerm A MIRIAM-compliant controlled vocabulary term
 CCVTermListClass for managing lists of CVTerm objects
 CDate A MIRIAM-compliant date representation
 CDateListClass for managing lists of Date objects
 CDefaultTermqual The default result of a Transition
 CDelay A delay on the time of execution of an SBML event
 CDeletioncomp Deletion of an object from a submodel
 CDimensionslayout Spatial dimensions of a 2D or 3D shape
 CElementFilter Base class for filter functions
 CEllipseGraphical representation of an ellipse from the SBML render extension
 CEvent A discontinuous SBML event
 CEventAssignment An assignment to a variable by an SBML event
 CExternalModelDefinitioncomp A reference to an externally-defined model
 CFbcExtensionfbc Base extension class for the package
 CFbcModelPluginfbc Extension of Model
 CFbcPkgNamespacesfbc SBMLNamespaces extension for the package
 CFbcSpeciesPluginfbc Extension of Species
 CFbcToCobraConverterfbc SBML Level 3 'fbc' to COBRA converter
 Cfloat_arrayProxy of C++ float_array class
 CFluxBoundfbc Max or min value for a reaction flux
 CFluxObjectivefbc An objective function for a flux
 CFunctionDefinition A user-defined function in an SBML model
 CFunctionTermqual A function term
 CGeneAssociationfbc Proposed annotation for gene associations
 CGeneralGlyphlayout A glyph for miscellaneous items
 CGlobalRenderInformationGlobalRenderInformation is the render information stored in the ListOfLayouts
 CGlobalStyleImplementation of the GlobalStyle concept of the SBML render extension
 CGradientStopLibSBML implementation of the gradient stop concept from the
 CGraphicalObjectlayout Base class of objects that store layouts
 CGraphicalPrimitive1DBase class for all graphical primitives which implements all 1D attributes
 CGraphicalPrimitive2DConstructor which creates a GraphicalPrimitive2D
 CImageImplementation of the Image concept from the SBML render extension
 CInitialAssignment An SBML initial assignment, evaluated once only
 CInputqual The input to a QualitativeSpecies
 Cint_arrayProxy of C++ int_array class
 CKineticLaw The rate expression for an SBML reaction
 CL3ParserSettings Controls the behavior of the Level 3 formula parser
 CLayoutlayout The layout of a diagram of an SBML model
 CLayoutExtensionlayout Base extension class for the package
 CLayoutModelPluginlayout Extension of Model
 CLayoutPkgNamespaceslayout SBMLNamespaces extension for the package
 CLayoutSpeciesReferencePluginlayout Extension of SpeciesReference
 CLinearGradientRepresentation of a linear gradient object from the SBML render extension
 CLineEndingLineEnding is a decoration element for the start and/or end of curves in the SBML render extension, e.g
 CLineSegmentlayout Representation of a line
 CListOf Parent class for libSBML's 'ListOfXYZ' classes
 CListOfColorDefinitionsLibSBML implementation for a container which holds zero or more ColorDefinition objects
 CListOfCompartmentGlyphslayout A list of CompartmentGlyph objects
 CListOfCompartments A list of Compartment objects
 CListOfCompartmentTypes A list of CompartmentType objects
 CListOfConstraints A list of Constraint objects
 CListOfCurveElementsA container to store curve elements (RenderPoint and RenderCubicBezier)
 CListOfDeletionscomp A list of Deletion objects
 CListOfDrawablesContainer class that stores objects derived from Transformation2D
 CListOfEventAssignments A list of EventAssignment objects
 CListOfEvents A list of Event objects
 CListOfExternalModelDefinitionscomp A list of ExternalModelDefinition objects
 CListOfFluxBoundsfbc A list of FluxBound objects
 CListOfFluxObjectivesfbc A list of FluxObjectives
 CListOfFunctionDefinitions A list of FunctionDefinition objects
 CListOfFunctionTermsqual A list of FunctionTerm objects
 CListOfGeneAssociationsfbc A list of GeneAssociation objects
 CListOfGlobalRenderInformationContainer class that stores GlobalRenderInformation objects
 CListOfGlobalStylesListOfGlobalStyles is the container class that stores GlobalStyles in GlobalRenderInformation objects
 CListOfGradientDefinitionsContainer class that holds a list of gradient definitions
 CListOfGradientStopsContainer that holds zero or more GradientStop objects
 CListOfGraphicalObjectslayout A list of GraphicalObject objects
 CListOfInitialAssignments A list of InitialAssignment objects
 CListOfInputsqual A list of Input objects
 CListOfLayoutslayout A list of Layout objects
 CListOfLineEndingsContainer class to store LineEnding objects
 CListOfLineSegmentslayout A list of LineSegment objects
 CListOfLocalParameters A list of LocalParameter objects
 CListOfLocalRenderInformationContainer class that stores LocalRenderInformation objects
 CListOfLocalStylesListOfLocalStyles is the container class that stores LocalStyles in LocalRenderInformation objects
 CListOfModelDefinitionscomp A list of ModelDefinition objects
 CListOfObjectivesfbc A list of Objective objects
 CListOfOutputsqual A list of Output objects
 CListOfParameters A list of Parameter objects
 CListOfPortscomp A list of Port objects
 CListOfQualitativeSpeciesqual A list of QualitativeSpecies objects
 CListOfReactionGlyphslayout A list of ReactionGlyph objects
 CListOfReactions A list of Reaction objects
 CListOfReferenceGlyphslayout A list of ReferenceGlyph objects
 CListOfReplacedElementscomp A list of ReplacedElement objects
 CListOfRules A list of Rule objects
 CListOfSpecies A list of Species objects
 CListOfSpeciesGlyphslayout A list of SpeciesGlyph objects
 CListOfSpeciesReferenceGlyphslayout A list of SpeciesReferenceGlyph objects
 CListOfSpeciesReferences A list of SpeciesReference objects
 CListOfSpeciesTypes A list of SpeciesType objects
 CListOfSubmodelscomp A list of Submodel objects
 CListOfTextGlyphslayout A list of TextGlyph objects
 CListOfTransitionsqual A list of Transition objects
 CListOfUnitDefinitions A list of UnitDefinition objects
 CListOfUnits A list of Unit objects
 CLocalParameter A parameter inside an SBML reaction definition
 CLocalRenderInformationLocalRenderInformation is the render information stored in Layouts
 CLocalStyleImplementation of the LocalStyle concept of the SBML render extension
 CModel An SBML model
 CModelCreator MIRIAM-compliant data about a model's creator
 CModelCreatorListClass for managing lists of ModelCreator objects
 CModelDefinitioncomp A model used in model composition
 CModelHistory MIRIAM-compliant data about a model's history
 CModifierSpeciesReference A reference to an SBML modifier species
 CObjectivefbc An objective function
 CostreamWrapper class for the C++ standard stream ostream
 CostringstreamWrapper class for the C++ standard file stream ofstream
 COutputqual The output from a QualitativeSpecies
 CParameter An SBML parameter: a named symbol with a value
 CPointlayout Representation of a point
 CPolygonClass representing a polygon from the SBML render extension
 CPortcomp An interface to be used in composition
 CPriority The priority of execution of an SBML event
 CQualExtensionqual Base extension class for the package
 CQualitativeSpeciesqual Extension of Species
 CQualModelPluginqual Extension of Model
 CQualPkgNamespacesqual SBMLNamespaces extension for the package
 CRadialGradientRepresentation of a radial gradient object from the SBML render extension
 CRateRule An SBML rate rule representing dx/dt = f(Y)
 CRDFAnnotationParser MIRIAM-compliant RDF annotation reader/writer
 CReaction An SBML reaction between species in an SBML model
 CReactionGlyphlayout A glyph for an SBML reaction
 CRectangleProxy of C++ Rectangle class
 CReferenceGlyphlayout Connection between an object and a glyph
 CRelAbsVectorThis class represents a pair of numerical values where one value represents an absolute value and the other value is a relative value in percent
 CRenderCubicBezierCubicBezier representation for RenderCurve objects and Polygon objects
 CRenderCurveImplementation of the Curve concept from the SBML render extension
 CRenderExtensionProxy of C++ RenderExtension class
 CRenderGraphicalObjectPluginProxy of C++ RenderGraphicalObjectPlugin class
 CRenderGroupThe RenderGroup concept from the SBML render extension is used to group graphical primitives together to create composite representations from simple primitives
 CRenderInformationBaseAbstract base class for local and global render information
 CRenderLayoutPluginProxy of C++ RenderLayoutPlugin class
 CRenderListOfLayoutsPluginProxy of C++ RenderListOfLayoutsPlugin class
 CRenderPkgNamespaces Set of SBML Level + Version + namespace triples
 CRenderPointRepresents a point where the coordinates can be made up of absolute as well as relative values (
 CReplacedBycomp Indicates an object replaced by another
 CReplacedElementcomp Indicates an object replaces another
 CReplacingcomp Convenience class
 CRule Parent class for SBML rules in libSBML
 CSBase SBML's SBase class, base class of most SBML objects
 CSBaseListClass for managing lists of SBase objects
 CSBasePlugin Base class for extending SBML objects in packages
 CSBaseRefcomp Base class for references to objects
 CSBMLConverter Base class for SBML converters
 CSBMLConverterRegistry Registry of all libSBML SBML converters
 CSBMLDocument Overall SBML container object
 CSBMLDocumentPlugin Base class for extending SBMLDocument in packages
 CSBMLError An error, warning or other diagnostic
 CSBMLErrorLog Log of diagnostics reported during processing
 CSBMLExtension Core class for SBML Level 3 package plug-ins
 CSBMLExtensionException Exception used by package extensions
 CSBMLExtensionRegistry Registry where package extensions are registered
 CSBMLFileResolvercomp Resolves documents stored on a file system
 CSBMLFunctionDefinitionConverter Converter to expand user-defined functions in-line
 CSBMLIdConverter Converter for replacing object identifiers
 CSBMLInferUnitsConverter Converter for inferring and setting parameter units
 CSBMLInitialAssignmentConverter Converter that removes SBML initial assignments
 CSBMLLevelVersionConverter Whole-document SBML Level/Version converter
 CSBMLLocalParameterConverter Converter to turn local parameters into global ones
 CSBMLNamespaces Set of SBML Level + Version + namespace triples
 CSBMLNamespacesListClass for managing lists of SBMLNamespaces objects
 CSBMLReactionConverter Converter to replace reactions with SBML rate rules
 CSBMLReader File and text-string SBML reader
 CSBMLResolvercomp Base class for SBML resolvers
 CSBMLResolverRegistrycomp Registry of all SBML resolvers
 CSBMLRuleConverter Converter that sorts SBML rules and assignments
 CSBMLStripPackageConverter Converter that removes SBML Level 3 packages
 CSBMLUnitsConverter Converts a model's existing units to SI units
 CSBMLUricomp Utility class for handling URIs
 CSBMLValidator Base class for SBML validators
 CSBMLWriter File and text-string SBML writer
 CSBO Facilities for using the Systems Biology Ontology
 CSimpleSpeciesReference Abstract class for references to species in reactions
 CSpecies An SBML species – a pool of entities
 CSpeciesGlyphlayout A glyph for an SBML species
 CSpeciesReference A reference to an SBML species in a reaction
 CSpeciesReferenceGlyphlayout A glyph for an SBML species reference
 CSpeciesType A species type in SBML Level 2
 CStoichiometryMath Stochiometry expressions in SBML Level 2 reactions
 CStringSetProxy of C++ std::set<(std::string)> class
 CStyleAbstract base class for local and global styles
 CSubmodelcomp A model instance inside another model
 CSyntaxChecker Methods for checking the validity of SBML identifiers
 CTextInstantiates a new Text object with the given id and position offset
 CTextGlyphlayout A glyph for a text label
 CTransformationImplementation of a 3D transformation matrix
 CTransformation2DImplementation of a 2D transformation matrix
 CTransitionqual A transition of a QualitativeSpecies
 CTrigger The trigger expression for an SBML event
 CUnit A single unit referenced in an SBML unit definition
 CUnitDefinition A definition of a unit used in an SBML model
 CXMLAttributes A list of attributes on an XML element
 CXMLError XML-level errors, warnings and other diagnostics
 CXMLErrorLog Log of diagnostics reported during XML processing
 CXMLInputStream An interface to an XML input stream
 CXMLNamespaces An XML Namespace
 CXMLNode A node in libSBML's XML document tree
 CXMLOutputStream Interface to an XML output stream
 CXMLOwningOutputFileStreamProxy of C++ XMLOwningOutputFileStream class
 CXMLOwningOutputStringStreamProxy of C++ XMLOwningOutputStringStream class
 CXMLToken A token in an XML stream
 CXMLTriple A qualified XML name
 CSBMLReader File and text-string SBML reader
 CSBMLWriter File and text-string SBML writer