org.jmol.jvxl.readers
Class AtomDataReader
class
AtomDataReader
extends VolumeDataReader
protected int atomCount
protected int[] atomIndex
protected int[] atomNo
protected float[] atomProp
protected float[] atomRadius
protected Point3f[] atomXyz
protected BitSet bsMyIgnored
protected BitSet bsMySelected
protected boolean doAddHydrogens
protected boolean doUseIterator
protected boolean doUsePlane
protected String fileDotModel
protected String fileName
protected int firstNearbyAtom
protected int modelIndex
protected int myAtomCount
protected int[] myIndex
protected int nearbyAtomCount
private Point3f xyzMax
private Point3f xyzMin
protected boolean fixTitleLine(int iLine)
protected void getAtoms(float marginAtoms, boolean doGetAllAtoms, boolean addNearbyAtoms)
private float getWorkingRadius(int i, float marginAtoms)
protected void setHeader(String calcType, String line2)
protected void setRangesAndAddAtoms(float ptsPerAngstrom, int maxGrid, int nWritten)
protected void setup()